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SRX2001260: Illumina sequencing of simian arteriviruses from experimentally infected crab-eating macaques
1 ILLUMINA (Illumina MiSeq) run: 217,283 spots, 51.8M bases, 22.9Mb downloads

Design: vRNA was isolated from cell culture supernatant or plasma stored in TriZol, extracted and reverse transcribed. PCR amplified full genome with 10, overlapping amplicons. Prepped with the Nextera XT library prep kit and sequenced on a 2 x 300 cycle kit with 1% PhiX.
Submitted by: University of Wisconsin-Madison
Study: Kibale red colobus virus 1 and simian hemorrhagic fever virus Genome sequencing and assembly
show Abstracthide Abstract
Simian arteriviruses are a group of viruses within the Arterivirus family that naturally infect wild African primates. KRCV-1 (previously called krc1) wild isolated from a wild red colobus monkey and passaged on Marc-145 cells and rhesus macaque PBMC. SHFV is the "type strain" of hemorrhagic fever-causing simian arteriviruses (formerly called the LVR type strain) and was originally isolated from moribund monkeys during an outbreak. In this study, 4 cynomolgus (crab-eating) macaques were experimentally infected with KRCV-1 and 4 were infected with SHFV. The 4 animals infected with KRCV-1 were then infected with SHFV after clearing KRCV-1 infection. We sequenced virus isolated from plasma taken at regular intervals during the study and sequenced vRNA on an Illumina MiSeq.
Sample:
SAMN05441541 • SRS1601874 • All experiments • All runs
Organism: Kibale virus
Library:
Name: crab_eating_macaque_4_KRCV-1_d5
Instrument: Illumina MiSeq
Strategy: AMPLICON
Source: VIRAL RNA
Selection: PCR
Layout: PAIRED
Runs: 1 run, 217,283 spots, 51.8M bases, 22.9Mb
Run# of Spots# of BasesSizePublished
SRR4001007217,28351.8M22.9Mb2016-08-09

ID:
2877214

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